PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10428163g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family RAV
Protein Properties Length: 439aa    MW: 48596.6 Da    PI: 8.3089
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10428163g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.2e-12139187155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      ++r++lg+f ++e Aa+ +++a+ k++g
  MA_10428163g0010 139 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNSEEVAARTYDKAAIKFRG 187
                       78****9888.8*********3.....5*************************98 PP

2B393.71.3e-29294390186
                       EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                       f k+ tpsdv+k++r+v+pk+fae++           g+ k++++ l +ed++ ++W+++++++++s++yvlt+GW++Fvk+++L++gD+v+F
  MA_10428163g0010 294 FNKTVTPSDVGKLNRIVIPKQFAEKYfsldvdvdgesGECKRNGVLLNFEDSTYKTWRFRYSFWNSSQSYVLTRGWNRFVKEKRLQAGDIVTF 386
                       899******************************99997778899************************************************* PP

                       EE-S CS
                B3  83 kldg 86 
                       +++ 
  MA_10428163g0010 387 ERSC 390
                       *543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.3E-15139193IPR016177DNA-binding domain
CDDcd000183.69E-24139193No hitNo description
SMARTSM003801.8E-25140201IPR001471AP2/ERF domain
PfamPF008472.1E-7140187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-18140193IPR001471AP2/ERF domain
PROSITE profilePS5103219.335140195IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.4E-37286413IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-29289410IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-25292393No hitNo description
PfamPF023621.0E-26294389IPR003340B3 DNA binding domain
SMARTSM010194.8E-17294405IPR003340B3 DNA binding domain
PROSITE profilePS5086313.676294406IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MVCVDCGIDS VSVYVLQASG NGNCATTPDV ALSLGRCLST SDADNSSYSG GVRNYSIAFK  60
ELGADSTTID NNESGSVTED DDPKSSPAVA GKSFCSNFSF ADGVGLERTG SGISVLSAEN  120
NQTPSAQGKE KSCKKLPSSQ YKGVVPQPNG RWGAQIYEKH QRVWLGTFNS EEVAARTYDK  180
AAIKFRGPDA ITNSNLVDSH QEAVFLGRHS KSEIVDMLRK HTYDEELKQN KTTSDINLDF  240
VGSXXXXXXX XXXXXXXXXX XXXXXKQNKT TSDINLDFVG STFPETPEPR EHLFNKTVTP  300
SDVGKLNRIV IPKQFAEKYF SLDVDVDGES GECKRNGVLL NFEDSTYKTW RFRYSFWNSS  360
QSYVLTRGWN RFVKEKRLQA GDIVTFERSC ATSISHKHFI SFSRRRCRRP FPTNTLSLSA  420
AAAAAASAMS SLQPPRRRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-3729138911103DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002979064.11e-90hypothetical protein SELMODRAFT_110104, partial
RefseqXP_009400502.12e-90PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822801e-89RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
STRINGPOPTR_0008s11600.11e-88(Populus trichocarpa)
STRINGEFJ200213e-90(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-89related to ABI3/VP1 2